xfr/longitudinal

Furen Xiao b6fa62a763 feat: initial project structure

Add .gitignore, AGENTS.md, scripts directory, and src directory to initialize the repository.

2026-09-25 16:00:37 +08:00

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AGENTS.md

Environment

This project uses a conda environment named longitudinal (Python 3.14).

Activate with:

source /opt/conda/etc/profile.d/conda.sh && conda activate longitudinal

Key packages: torch 2.14 (+cu126), torchvision, numpy, scipy, pandas, scikit-learn, scikit-image, matplotlib, nibabel, SimpleITK.

Project

Longitudinal (repeated-measures) analysis of medical imaging data. Repo is at an early stage — see README.md for any project notes.

Conventions

All Python commands must run inside the longitudinal conda environment.
GPU is available (CUDA 12.6); use torch.device('cuda') when appropriate.
No lint/test tooling is configured yet; run scripts directly with python <script>.